4.8 Further Reading

Altschul, S.F. (1991). "Amino acid substitution matrices from an information theoretic perspective." Journal of Molecular Biology, Vol. 219, pp. 555-565.

Altschul, S.F. (1997). "Evaluating the statistical significance of multiple distinct local alignments." Theoretical and Computational Methods in Genome Research, S. Suhai (ed.), pp. 1-14.

Altschul, S.F. (1993). "A protein alignment scoring system sensitive at all evolutionary distances." Journal of Molecular Evolution, Vol. 36, pp. 290-300.

Altschul, S.F., M.S. Boguski, W. Gish, and J.C. Wootton (1994). "Issues in searching molecular sequence databases." Nature Genet., Vol. 6, pp. 119-129.

Altschul S.F., R. Bundschuh, R. Olsen, T. Hwa (2001) "The estimation of statistical parameters for local alignment score distributions." Nucleic Acids Research, January 15;29(2), pp. 351-361.

Altschul, S.F. and W. Gish (1996). "Local alignment statistics." Meth. Enzymol., Vol. 266, pp. 460-480.

Dayhoff, M.O., R.M. Schwartz, and B.C. Orcutt (1978). "A model of evolutionary change in proteins." Atlas of Protein Sequence and Structure, Vol. 5, Suppl. 3. M.O. Dayhoff (ed.), National Biomedical Research Foundation, pp. 345-352.

Henikoff, S. and J.G. Henikoff (1992). "Amino acid substitution matrices from protein blocks." Proceedings of the National Academy of Sciences, Vol. 89, pp. 10915-10919.

Karlin, S. and S.F. Altschul (1993). "Applications and statistics for multiple high-scoring segments in molecular sequences." Proceedings of the National Academy of Sciences, Vol. 90, pp. 5873-5877.

Karlin, S. and S. F. Altschul (1990). "Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes." Proceedings of the National Academy of Sciences, Vol. 87, pp. 2264-2268.

Schaffer A.A., Aravind L., Madden TL., Shavirin S., Spouge JL., Wolf YI., Koonin EV., Altschul SF. (2001). "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements." Nucleic Acids Research, July 15;29(14), pp. 2994-3005.

Schwartz, R.M. and M.O. Dayhoff (1978). "Matrices for detecting distant relationships." Atlas of Protein Sequence and Structure, Vol. 5, Suppl. 3. M.O. Dayhoff (ed.), National Biomedical Research Foundation, pp. 353-358.