Search
 
SCRIPT & CODE EXAMPLE
 
CODE EXAMPLE FOR SHELL

fsl flirt

#!/bin/sh

# Use FSL flirt to register label masks 
# with nearest neighbor interpolation. 
# because the label values should never be interpolated.
# This example assumes: 
# an existing 0.5mm standard brain (MNI152_T1_0.5mm_brain)
# an existing flirt matrix from 1 mm to 0.5 mm (stand1stand0.5.mat)

 flirt -in atlas -datatype int -ref MNI152_T1_0.5mm_brain 
 -interp nearestneighbour 
 -init stand1stand0.5.mat -applyxfm -out atlas_0.5mm
 
PREVIOUS NEXT
Tagged: #fsl #flirt
ADD COMMENT
Topic
Name
5+5 =