#!/bin/sh
# Populate each subdirectory with slices of a 3D volume.
# Uses: Slice a tract mask and use these 2D roi cross-sections
# to extract any tract measures and identify changes along the tract.
# In the examples, we populate appropriately named directories
# with numbered slices:
fslsplit img ax/ax_ -z # axial slices
fslsplit img sag/sag_ -x # sagittal slices
fslsplit img cor/cor_ -y # coronal slices