BLAST-BLAST

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B= parameter (WU-BLAST)
Bacteria
bandwidth
base pair (bp) 2nd 3rd
Basic Local Alignment Search Tool [See BLAST]
batch retrieval systems
benchmarking
    blastn
    blastp 2nd 3rd 4th
    EST search
    systems
Beowulf clusters
big-O notation
biological sequences 2nd [See also evolution genes genomes molecular biology][See also evolution genes genomes molecular biology]3rd
Bioperl
    annotating ESTs
    clustering and
    database purifiers
    parsing
    repeat masking and
bit score
    defined
    Expect and 2nd
    lambda and
bitScoreToExpect function
bl2seq (NCBI-BLAST)
    BLASTX and 2nd
    exons and 2nd 3rd
    functionality
    HSPs and 2nd
    installation files
    parameter
BLAST (Basic Local Alignment Search Tool)
    custom databases
    functionality
    implementation
    optimizing
    report formats
    search tips
    serial searching
    standard databases
    statistical outliers
    traditional programs
    viewing graphically
BLAST algorithm
    evaluation
    extension
    overview 2nd
    seeding
blast-imager.pl
blast.hqx (OS 9)
blast2table.pl
blasta (WU-BLAST) 2nd
blastall (NCBI-BLAST)
    error messages
    installation files
    parameters
blastclust (NCBI-BLAST)
    clustering with 2nd
    installation files
    parameters
BLASTDB environment variable 2nd 3rd
BLASTFILTER environment variable
BlastMachine
BLASTMAT environment variable 2nd 3rd
BLASTN
    alignment format
    benchmarking speed
    BLAST program
    display formats
    ESTs and
    I/O considerations
    implementation 2nd 3rd
    Karlin-Altschul statistics
    as NCBI-BLAST component
    reporting format
    searches 2nd 3rd
    seeding
    strandedness
    as WU-BLAST component
BLASTP
    alignments
    benchmarking 2nd 3rd
    BLAST program
    composition-based lambda
    display formats
    implementation considerations 2nd
    sample HSP
    searches 2nd 3rd
    strandedness
blastpgp (NCBI-BLAST)
    installation files
    parameters
    PHI-BLAST 2nd
BLASTX
    alignment
    BLAST program
    display formats
    effective length
    gene-finding tool 2nd
    searches 2nd
    strandedness
    sum scores and
    translations
    ungapped alignment
BLASTZ 2nd
BLAT algorithm
blocks
BLOSUM (BLOcks SUbstitution)
    BLASTX searches
    insensitive search and
    overview
    relative entropy
book of life 2nd
bottom parameter (WU-BLAST)
Boutell, Thomas
bp (base pair) 2nd 3rd
brackets [] 2nd
bus speed

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