BLAST-BLAST

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P-value
    alignment groups
    BLASTP
    converting raw scores
    HSPs and
    search space and
    WU-BLAST and 2nd
pair-wise (sum statistics)
pair-wise frequency 2nd
pair-wise ordered sum score
pair-wise scores 2nd 3rd
pair-wise sum P-value 2nd 3rd 4th
pair-wise test-corrected sum-P
pairwise alignment (display format)
Pairwise view
.pal extension
palindrome
PAM (Percent Accepted Mutation) matrices 2nd
Paracel-BLAST
paralogs
    cross-species exploration
    defined
    mapping DNA/genomes 2nd
    transcript clustering
parameters
    BLAST searches and
    blastall program
    links
    NCBI
    optimizing for BLAST searches
    WU-BLAST
Parasol DRM
parentheses ()
parsing
    Bioperl
    processing records
    tabular format
pataa database
patdb (WU-BLAST) 2nd 3rd 4th
PATH environment variable 2nd 3rd
patnt database
patseedp option (PHI-BLAST) 2nd
patterns 2nd
PBS distributed resource management
PCR (polymerase chain reaction) 2nd
PDB database
Percent Accepted Mutation (PAM) matrices 2nd
percent identity
    annotating ESTs
    BLASTP searches
    BLASTX searches
    clustering blocks by
    example
    exploring and
    insensitive search and
    match-mismatch and
    megablast parameter
performance
    multiprocessor computers
    optimizing BLAST searches
Pfam database
phenylalanine (F)
    hydrophilic amino acids and
    pairing
    substitutions
    table
PHI-BLAST
    BLAST program
    blastpgp parameters
    display formats
    features 2nd
photosynthesis
PHRAP program
phylogeny 2nd
pilots, scientific experiments and
pipe (|) 2nd 3rd 4th
pipelines, caching and 2nd 3rd
PIR database
pir2fasta (WU-BLAST file)
plants
Platform LSF distributed resource management
plus (+)
plus strand 2nd
PNG format 2nd
polarity 2nd 3rd
poly-A tail
    ESTs
    genomic sequence
    mRNA 2nd
    transcript clustering
    transcripts
poly-adenylation
poly-T primers
polymorphisms
population genetics
PostgreSQL
postsw parameter (WU-BLAST)
precision 2nd
pressdb (WU-BLAST) 2nd 3rd
1û (primary) structure
priming 2nd 3rd
probability
    defined
    overview
    P-value and
    sum
prokaryotes 2nd
proline (P) 2nd
ProPBS DRM
PROSITE format 2nd
protein sequence
    BLAST and 2nd
    blastclust
    cDNAs and
    example 2nd 3rd
    GenBank
    INSD
    mutation and 2nd
    PAM matrices
    PSI-BLAST
    translating to 2nd
    WU-BLAST 2nd
proteins
    average length 2nd
    BLASTP searches 2nd 3rd
    BLASTX searches 2nd
    BLOSUM matrices and
    coding sequence for
    est database
    ESTs and 2nd
    fastacmd parameter
    formatdb parameter
    genes and
    hypothetical
    low-complexity sequence
    mapping to genomes 2nd
    mining ESTs 2nd
    mutation and
    natural selection and
    nr database and
    overview
    percent identity and
    PHI-BLAST
    PSI-BLAST
    public repository
    redundant
    RNA polymerase
    sequencing transcripts for
    TBLASTN searches 2nd
protista
protocols (BLASTN)
pseudogenes
    BLASTX 2nd
    conservation
    cross-species exploration
    mapping DNA/EST to genomes
    overview
    stop codons 2nd
PSI-(pattern-hit initiated) BLAST
    BLAST program
    blastpgp parameters
    checkpoint file
    composition-based lambda
    display formats
    features
    reference
    sensitive searches
psitblastn (blastall) 2nd
PSSM (position-specific scoring matrix)
    blastgpg parameter
    blastpgp parameter 2nd
    PSI-BLAST 2nd
public domain (NCBI-BLAST) 2nd
PubMed
purine (R) 2nd 3rd
pyrimidine (Y) 2nd