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Darwin, Charles 
dash (-)
    NCBI display formats  2nd 
    NCBI-BLAST 
    PHI-BLAST 
    PSI-BLAST 
    Unix and 
    xdformat and xdget 
database identifier  [See accession number]
database sequence
    blastall parameter 
    BLASTN 
    BLASTP 
    megablast parameter 
    TBLASTN 
databases
    accuracy of 
    BLAST databases 
    blastall parameter 
    compute clusters and  2nd 
    environment variables and 
    FASTA files 
    growth in 
    indexes  2nd  3rd 
    joining  2nd 
    nucleotides 
    popular 
    protein 
    purifying 
    queries and  2nd 
    selection  2nd  3rd 
    sequence database management 
    sequence databases 
    splitting  2nd 
date fields (flat files) 
Dayhoff, Margaret  2nd  3rd 
dbrecmax= parameter (WU-BLAST) 
dbrecmin parameter (WU-BLAST)  2nd 
DDBJ (DNA Data Bank of Japan)
    accession numbers  2nd 
    est database and 
    flat files  2nd 
    GI number 
    INSD and 
    nucleotide sequences 
    version number 
DeCypher accelerator  2nd 
DEFINITION (sequence record) 
definition lines
    concatenated  2nd 
    defined 
    display variations 
    FASTA guidelines 
    xdget parameter 
deletion
    cross-species exploration 
    extension and 
    introns and 
    mutation and  2nd 
    pseudogenes 
    representation  2nd 
delimiters
    colons as 
    Control-A separators  2nd  3rd 
    FASTA files 
deoxyribonucleic acid  [See DNA]
differential reproduction 
display formats (NCBI-BLAST) 
distributed resource management (DRM) 
DNA (deoxyribonucleic acid)  [See also cDNA][See also cDNA]
    BLASTX searches 
    masking repeats 
    mitochondrial  2nd 
    NCBI as repository 
    overview 
    public repository 
    replication  2nd 
    translating in reading frames 
    variation in 
DNA sequence
    clustering 
    errors and 
    example  2nd 
    genetic drift 
    mapping to genomes 
    memory requirements 
    mutation and  2nd 
    prokaryotic genes 
    vectors and  2nd 
dot (.)  2nd  3rd 
double affine 
DP (dynamic programming)
    BLAST algorithms and 
    HSPs and 
    megablast parameter 
    overview 
    sequence alignment and 
drecmax parameter (WU-BLAST) 
DRM (distributed resource management) 
Drosophila melanogaster  2nd  3rd  4th 
dynamic programming  [See DP]

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