[SYMBOL]
[A]
[B]
[C]
[D]
[E]
[F]
[G]
[H]
[I]
[J]
[K]
[L]
[M]
[N]
[O]
[P]
[Q]
[R]
[S]
[T]
[U]
[V]
[W]
[X]
[Y]
[Z]
E-value
alignment and
2nd
3rd
4th
annotating ESTs
bl2seq parameter
blastall parameter
BLASTP searches
blastpgp parameter
BLASTX searches
convergence and
cross-species exploration
Expect and
final threshold and
2nd
gapped alignments
genomic DNA/ESTs
insensitive search
2nd
low-scoring alignment
mapping DNA/ESTs
mapping DNA/genomes
mapping oligo/genomes
2nd
report summary
sensitive searches
undercalling and
WU-BLAST
2nd
3rd
E= parameter (WU-BLAST)
E2= parameter (WU-BLAST)
echofilter parameter (WU-BLAST)
ecoli database
effective HSP length
2nd
effective lengths
2nd
3rd
effectiveLengthDB function
effectiveLengthSeq function
2nd
EMBL (European Molecular Biology Laboratory)
accession numbers
est database
flat files
2nd
INSD
locus
nucleotide sequences
organism names
version number
enhancers
entropy
[See also relative entropy][See also relative entropy]
conservation and
defined
example
environment variables
BLASTDB
2nd
3rd
BLASTFILTER
BLASTMAT
2nd
3rd
NCBI-BLAST
2nd
PATH
2nd
3rd
WU-BLAST
2nd
enzymes
2nd
3rd
4th
errors parameter (WU-BLAST)
Escherichia coli
2nd
est database
EST2GENOME program
ESTs (expressed sequence tags)
alignment
annotating
2nd
3rd
BLASTN search
2nd
CDNA library
clustering
2nd
contaminants in databases
defined
EST2GENOME
fastacmd program
gaps in coverage
mapping to genomes
2nd
mining
2nd
proteins and
raw sequencing and
TBLASTN searches
2nd
TBLASTX searches
transcript clustering
transcripts
unannotated proteins and
xdformat
/etc/sysblast file
2nd
euchromatic (nonrepetitive DNA) sequence
eukaryotes
gene structure
genome division
genomic structure
2nd
nucleus and
pseudogenes in
repetitive elements
viruses and
Eurcarya
evolution
genetic drift
molecular
2nd
mutation and
2nd
natural selection and
2nd
neutral theory of
overview
relationships among organisms
exons
alignment
2nd
average length
BLASTX search
defined
determining structure
ESTs and
gapped alignment
gaps in coverage and
junk and
mapping DNA/EST to genomes
repeat proximity
WU-BLASTN defaults
Expect
BLAST statistics
BLASTP
calculating
footer reports
frame/size corrected
grouping and
of HSP
pair-wise sum P-value
2nd
raw scores
2nd
sum score
2nd
3rd
expectation value
bl2seq parameter
blastall
blastpgp parameter
megablast
expected HSP length
BLASTX query and
calculating Expect
Karlin-Altschul statistics
lambda and
search space and
expected score
2nd
3rd
expectedHSPlength function
2nd
exploring
BLAST experiments
BLASTP searches
2nd
BLASTX searches
cross-species sequence
2nd
ESTs/genomic DNA
expressed sequence tags
[See ESTs]
expression, genes and
2nd
eXtensible Markup Language (XML)
2nd
extension
bl2seq parameter
blastall parameter
BLASTX search
exons and
sequencing errors and
transcripts and
2nd
extension phase
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