[SYMBOL]
[A]
[B]
[C]
[D]
[E]
[F]
[G]
[H]
[I]
[J]
[K]
[L]
[M]
[N]
[O]
[P]
[Q]
[R]
[S]
[T]
[U]
[V]
[W]
[X]
[Y]
[Z]
gap decay constant
2nd
gap penalty
blastall parameter
2nd
BLASTP
2nd
blastpgp parameter
2nd
lambda and
massaging statistics
NCBI-BLAST
2nd
gapE2= parameter (WU-BLAST)
gapH= parameter (WU-BLAST)
gapK= parameter (WU-BLAST)
gapL= parameter (WU-BLAST)
gapped alignment
bl2seq parameter
blastall parameter
2nd
blastpgp parameter
2nd
depicted
E-values with
Karlin-Altschul statistics
mapping oligo/genomes
megablast parameter
NCBI-BLAST
overview
WU-BLAST parameter
2nd
3rd
WU/NCBI-BLAST differences
gaps
BLASTP
exons and
extensions and
massaging statistics and
gapS2= parameter (WU-BLAST)
gapsepqmax= parameter (WU-BLAST)
gapsepsmax= parameter (WU-BLAST)
gapX parameter (WU-BLAST)
Gaussian distribution
gb2fasta (WU-BLAST file)
GD graphics library
GenBank
accession numbers
2nd
download considerations
flat files
2nd
GI number
INSD
libraries of repetitive elements
nr database
2nd
nucleotide sequences
protein sequences
size of
version number
GENE-BLAST
2nd
Genentech
genes
BLASTX searches
2nd
3rd
conservation
defined
determining structure
developmental regulation
ESTs and
exons and
identifying
mapping
mRNAs and
2nd
mutation and
natural selection
as orthologs
overview
stop codons and
TBLASTX search
2nd
within genes
genetic code
genetic drift
GenInfo Identifier
[See GI number]
genome survey sequences (gss)
genomes
aligning transcripts to
book of life
2nd
chromosomes
contamination
defined
discriminating exons
divisions of
EST2GENOME
genes and
htg database
length of
mapping
2nd
3rd
4th
noncoding sequence in
overview
repeats and
2nd
sequencing projects
shotgun coverage
simple repeats
TBLASTX searches
2nd
3rd
4th
viruses
genomic DNA
annotating with ESTs
BLASTX searches
contaminants and
finding correct structure
finding undocumented genes
gene finding in
masking repeats
2nd
3rd
4th
memory and
genomic sequence
aligning transcripts
alignment
BLASTX searches
2nd
htg database
identifying genes in
mapping
poly-A tail
repeats and
segment large
2nd
serial searching
shotgun reads
2nd
TBLASTX
GI (GenInfo Identifier) number
alias databases
blastall parameter
compound identifiers
example
fastacmd parameter
formatdb parameter
2nd
GILIST and
indexes and
megablast parameter
2nd
VERSION field and
WU-BLAST parameter
gi parameter (WU-BLAST)
GIF format
2nd
GILIST (alias databases)
Gish, Warren
global alignment
file phase
initialization phase
local versus
overview
reduced memory and
2nd
trace-back
transcripts and genomic sequences
glutamate (E)
2nd
glutamine (Q)
2nd
glycine (G)
2nd
golf= parameter (WU-BLAST)
golmax= parameter (WU-BLAST)
greater than sign (>)
2nd
gspmax= parameter (WU-BLAST)
gss (genome survey sequences)
gt2fasta (WU-BLAST file)
guanine (G)
2nd
3rd
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