[SYMBOL]
[A]
[B]
[C]
[D]
[E]
[F]
[G]
[H]
[I]
[J]
[K]
[L]
[M]
[N]
[O]
[P]
[Q]
[R]
[S]
[T]
[U]
[V]
[W]
[X]
[Y]
[Z]
H (relative entropy of scoring matrix)
BLASTP searches
defined
footer
gapped alignments
match-mismatch scoring
ungapped values
H= parameter (WU-BLAST)
hardware optimization
HI (hit initiation) tag (PHI-BLAST)
high-scoring pair
[See HSP]
histidine (H)
2nd
Hit Table alignment view
hitdist= parameter (WU-BLAST)
2nd
hits
blastpgp parameter
defined
mapping oligo/genomes
megablast parameter
multiple HSPs as
troubleshooting
WU-BLAST parameter
HMMER algorithm
homology
cross-species exploration
proteins and
PSI-BLAST
sequences
horizontal gap score
2nd
HSP (high-scoring pair)
[See also expected HSP length][See also expected HSP length]
BLAST and
BLASTP search
exons and
2nd
Expect of
2nd
final threshold
frame-shifts
2nd
junk and
megablast parameter
normalized scores
pair-wise sum P-value
repeats and
reports
2nd
3rd
statistical significance
sum score
2nd
transcript clustering
WU-BLAST parameter
hspmax= parameter (WU-BLAST)
hspsepqmax= parameter (WU-BLAST)
hspsepsmax= parameter (WU-BLAST)
HT-BLAST
htg database
HTML format
hydrophilic amino acids
2nd
hydrophobic amino acids
classification
codons with T
sequence similarity
substitutions and
hypothetical proteins
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