[SYMBOL]
[A]
[B]
[C]
[D]
[E]
[F]
[G]
[H]
[I]
[J]
[K]
[L]
[M]
[N]
[O]
[P]
[Q]
[R]
[S]
[T]
[U]
[V]
[W]
[X]
[Y]
[Z]
P-value alignment groups
BLASTP
converting raw scores
HSPs and
search space and
WU-BLAST and
2nd
pair-wise (sum statistics)
pair-wise frequency
2nd
pair-wise ordered sum score
pair-wise scores
2nd
3rd
pair-wise sum P-value
2nd
3rd
4th
pair-wise test-corrected sum-P
pairwise alignment (display format)
Pairwise view
.pal extension
palindrome
PAM (Percent Accepted Mutation) matrices
2nd
Paracel-BLAST
paralogs cross-species exploration
defined
mapping DNA/genomes
2nd
transcript clustering
parameters BLAST searches and
blastall program
links
NCBI
optimizing for BLAST searches
WU-BLAST
Parasol DRM
parentheses ()
parsing Bioperl
processing records
tabular format
pataa database
patdb (WU-BLAST)
2nd
3rd
4th
PATH environment variable
2nd
3rd
patnt database
patseedp option (PHI-BLAST)
2nd
patterns
2nd
PBS distributed resource management
PCR (polymerase chain reaction)
2nd
PDB database
Percent Accepted Mutation (PAM) matrices
2nd
percent identity annotating ESTs
BLASTP searches
BLASTX searches
clustering blocks by
example
exploring and
insensitive search and
match-mismatch and
megablast parameter
performance multiprocessor computers
optimizing BLAST searches
Pfam database
phenylalanine (F) hydrophilic amino acids and
pairing
substitutions
table
PHI-BLAST BLAST program
blastpgp parameters
display formats
features
2nd
photosynthesis
PHRAP program
phylogeny
2nd
pilots, scientific experiments and
pipe (|)
2nd
3rd
4th
pipelines, caching and
2nd
3rd
PIR database
pir2fasta (WU-BLAST file)
plants
Platform LSF distributed resource management
plus (+)
plus strand
2nd
PNG format
2nd
polarity
2nd
3rd
poly-A tail ESTs
genomic sequence
mRNA
2nd
transcript clustering
transcripts
poly-adenylation
poly-T primers
polymorphisms
population genetics
PostgreSQL
postsw parameter (WU-BLAST)
precision
2nd
pressdb (WU-BLAST)
2nd
3rd
1û (primary) structure
priming
2nd
3rd
probability defined
overview
P-value and
sum
prokaryotes
2nd
proline (P)
2nd
ProPBS DRM
PROSITE format
2nd
protein sequence BLAST and
2nd
blastclust
cDNAs and
example
2nd
3rd
GenBank
INSD
mutation and
2nd
PAM matrices
PSI-BLAST
translating to
2nd
WU-BLAST
2nd
proteins average length
2nd
BLASTP searches
2nd
3rd
BLASTX searches
2nd
BLOSUM matrices and
coding sequence for
est database
ESTs and
2nd
fastacmd parameter
formatdb parameter
genes and
hypothetical
low-complexity sequence
mapping to genomes
2nd
mining ESTs
2nd
mutation and
natural selection and
nr database and
overview
percent identity and
PHI-BLAST
PSI-BLAST
public repository
redundant
RNA polymerase
sequencing transcripts for
TBLASTN searches
2nd
protista
protocols (BLASTN)
pseudogenes BLASTX
2nd
conservation
cross-species exploration
mapping DNA/EST to genomes
overview
stop codons
2nd
PSI-(pattern-hit initiated) BLAST BLAST program
blastpgp parameters
checkpoint file
composition-based lambda
display formats
features
reference
sensitive searches
psitblastn (blastall)
2nd
PSSM (position-specific scoring matrix) blastgpg parameter
blastpgp parameter
2nd
PSI-BLAST
2nd
public domain (NCBI-BLAST)
2nd
PubMed
purine (R)
2nd
3rd
pyrimidine (Y)
2nd
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